Diff pysam-0.23.0 with a pysam-9999
| /usr/portage/sci-biology/pysam/pysam-9999.ebuild 2025-08-07 18:21:07.607831902 +0300 | ||
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| 4 | 4 |
EAPI=8 |
| 5 | 5 |
DISTUTILS_EXT=1 |
| 6 | 6 |
DISTUTILS_USE_PEP517=setuptools |
| 7 |
PYTHON_COMPAT=( python3_{10..13} )
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| 7 |
PYTHON_COMPAT=( python3_{11..13} )
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| 8 | 8 | |
| 9 | 9 |
inherit distutils-r1 |
| 10 | 10 | |
| 11 |
if [[ ${PV} == *9999 ]]; then
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| 12 |
inherit git-r3 |
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| 13 |
EGIT_REPO_URI="https://github.com/pysam-developers/pysam.git" |
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| 14 |
else |
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| 15 |
SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
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| 16 |
KEYWORDS="~amd64 ~x86" |
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| 17 |
fi |
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| 18 | ||
| 11 | 19 |
DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" |
| 12 | 20 |
HOMEPAGE=" |
| 13 | 21 |
https://github.com/pysam-developers/pysam |
| 14 | 22 |
https://pypi.org/project/pysam/" |
| 15 |
SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
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| 16 | 23 | |
| 17 | 24 |
LICENSE="MIT" |
| 18 | 25 |
SLOT="0" |
| 19 |
KEYWORDS="~amd64 ~x86" |
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| 20 | 26 | |
| 21 |
RDEPEND="=sci-libs/htslib-1.21*:=" |
|
| 27 |
RDEPEND=">=sci-libs/htslib-1.21" |
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| 22 | 28 |
DEPEND="${RDEPEND}"
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| 23 | 29 |
BDEPEND=" |
| 24 |
dev-python/cython[${PYTHON_USEDEP}]
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| 25 | 30 |
test? ( |
| 26 |
=sci-biology/bcftools-1.21* |
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| 27 |
=sci-biology/samtools-1.21* |
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| 31 |
>=sci-biology/bcftools-1.21 |
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| 32 |
>=sci-biology/samtools-1.21 |
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| 28 | 33 |
)" |
| 29 | 34 | |
| 30 | 35 |
distutils_enable_tests pytest |
| ... | ... | |
| 38 | 43 |
) |
| 39 | 44 | |
| 40 | 45 |
python_prepare_all() {
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| 41 | ||
| 42 | 46 |
# unbundle htslib |
| 43 | 47 |
export HTSLIB_MODE="external" |
| 44 | 48 |
export HTSLIB_INCLUDE_DIR="${ESYSROOT}"/usr/include
|