trnascan-se-1.31-r3.ebuild
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# Copyright 1999-2022 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 inherit flag-o-matic perl-functions toolchain-funcs DESCRIPTION="tRNA detection in large-scale genome sequences" HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/" SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz" S="${WORKDIR}"/tRNAscan-SE-1.3.1/ LICENSE="GPL-2" SLOT="0" KEYWORDS="~amd64 ~x86" RDEPEND="dev-lang/perl:=" BDEPEND="${RDEPEND}" PATCHES=( "${FILESDIR}"/${P}-makefile.patch "${FILESDIR}"/${P}-portable-perl-shebangs.patch "${FILESDIR}"/${P}-clang16.patch ) src_configure() { tc-export CC append-cflags -std=gnu89 # mid-migration from K&R C, incompatible with c2x } src_test() { emake PATH="${S}:${PATH}" testrun } src_install() { dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4 newman tRNAscan-SE.man tRNAscan-SE.man.1 dodoc MANUAL Manual.ps README Release.history insinto /usr/share/trnascan-se doins *.cm gcode.* Dsignal TPCsignal perl_domodule -r tRNAscanSE } | ||