Сравнение pysam-0.21.0 с pysam-9999
| /usr/portage/sci-biology/pysam/pysam-9999.ebuild 2023-10-09 14:52:35.024368490 +0300 | ||
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| 7 | 7 | |
| 8 | 8 |
inherit distutils-r1 |
| 9 | 9 | |
| 10 |
if [[ ${PV} == *9999 ]]; then
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| 11 |
inherit git-r3 |
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| 12 |
EGIT_REPO_URI="https://github.com/pysam-developers/pysam.git" |
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else |
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SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
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KEYWORDS="~amd64 ~x86" |
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fi |
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| 10 | 18 |
DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" |
| 11 | 19 |
HOMEPAGE=" |
| 12 | 20 |
https://github.com/pysam-developers/pysam |
| 13 | 21 |
https://pypi.org/project/pysam/" |
| 14 |
SRC_URI="https://github.com/pysam-developers/pysam/archive/v${PV}.tar.gz -> ${P}.gh.tar.gz"
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| 15 | 22 | |
| 16 | 23 |
LICENSE="MIT" |
| 17 | 24 |
SLOT="0" |
| 18 |
KEYWORDS="~amd64 ~x86" |
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| 19 | 25 | |
| 20 |
RDEPEND="=sci-libs/htslib-1.17*:=" |
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RDEPEND=">=sci-libs/htslib-1.17" |
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| 21 | 27 |
DEPEND="${RDEPEND}
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| 22 | 28 |
dev-python/cython[${PYTHON_USEDEP}]
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| 23 | 29 |
dev-python/setuptools[${PYTHON_USEDEP}]"
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| 24 | 30 |
BDEPEND=" |
| 25 | 31 |
test? ( |
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=sci-biology/bcftools-1.17* |
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=sci-biology/samtools-1.17* |
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| 32 |
>=sci-biology/bcftools-1.17 |
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>=sci-biology/samtools-1.17 |
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| 28 | 34 |
)" |
| 29 | 35 | |
| 30 | 36 |
distutils_enable_tests pytest |
| 31 | 37 | |
| 32 | 38 |
DISTUTILS_IN_SOURCE_BUILD=1 |
| 33 | 39 | |
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PATCHES=( |
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# backport |
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# https://github.com/pysam-developers/pysam/commit/17bb13dcfdb56ac238458dcef23fe01893a892e9 |
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| 37 |
"${FILESDIR}"/${P}-cython-3.patch
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) |
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| 39 | ||
| 40 | 40 |
EPYTEST_DESELECT=( |
| 41 | 41 |
# only work with bundled htslib |
| 42 | 42 |
'tests/tabix_test.py::TestRemoteFileHTTP' |