glimmerhmm-3.0.1-r1.ebuild
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# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=7 inherit toolchain-funcs MY_P=GlimmerHMM DESCRIPTION="A eukaryotic gene finding system from TIGR" HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/" SRC_URI="ftp://ftp.cbcb.umd.edu/pub/software/glimmerhmm/${MY_P}-${PV}.tar.gz" LICENSE="Artistic" SLOT="0" KEYWORDS="amd64 ~x86" S="${WORKDIR}/${MY_P}" PATCHES=( "${FILESDIR}"/${PV}-gentoo.patch "${FILESDIR}"/${PN}-3.0.1-fix-data-path.patch ) src_configure() { tc-export CC CXX } src_compile() { emake -C sources emake -C train } src_install() { dobin sources/glimmerhmm train/trainGlimmerHMM insinto /usr/share/${PN}/lib doins train/*.pm insinto /usr/share/${PN}/models doins -r trained_dir/. exeinto /usr/libexec/${PN}/training_utils doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} dodoc README.first train/readme.train } | ||