augustus-3.4.0-r3.ebuild
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# Copyright 1999-2023 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=8 DOCS_BUILDER="doxygen" DOCS_CONFIG_NAME="doxygen.conf" inherit docs toolchain-funcs DESCRIPTION="Eukaryotic gene predictor" HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/" SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz" S="${WORKDIR}/${P^}" LICENSE="Artistic" SLOT="0" KEYWORDS="~amd64 ~x86" RDEPEND=" dev-db/sqlite:3 dev-db/mysql++:= dev-db/mysql-connector-c:= dev-libs/boost:=[zlib] sci-biology/bamtools:= sci-biology/samtools:0 sci-libs/gsl:= sci-libs/htslib:= sci-libs/suitesparse sci-mathematics/lpsolve:= sys-libs/zlib " DEPEND="${RDEPEND}" src_compile() { tc-export CC CXX emake LINK.cc="$(tc-getCXX)" docs_compile } src_install() { einstalldocs # from upstream Makefile install: dodir "opt/${P}" cp -a config bin scripts "${ED}/opt/${P}" || die local file for file in bin/*; do dosym "../${P}/${file}" "/opt/${file}" done } | ||