Diff bowtie-2.4.4 with a bowtie-2.5.1
| /usr/portage/sci-biology/bowtie/bowtie-2.5.1.ebuild 2023-10-09 14:52:34.996368489 +0300 | ||
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| 3 | 3 | |
| 4 | 4 |
EAPI=8 |
| 5 | 5 | |
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PYTHON_COMPAT=( python3_{9..10} )
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PYTHON_COMPAT=( python3_{9..11} )
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inherit python-single-r1 toolchain-funcs |
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DESCRIPTION="Popular short read aligner for Next-generation sequencing data" |
| 11 |
HOMEPAGE="http://bowtie-bio.sourceforge.net/bowtie2/" |
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HOMEPAGE="https://bowtie-bio.sourceforge.net/bowtie2/" |
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| 12 | 12 |
SRC_URI="mirror://sourceforge/project/${PN}-bio/bowtie2/${PV}/bowtie2-${PV}-source.zip"
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| 13 | 13 |
S="${WORKDIR}/${PN}2-${PV}"
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| 14 | 14 | |
| 15 | 15 |
LICENSE="GPL-3" |
| 16 | 16 |
SLOT="2" |
| 17 | 17 |
KEYWORDS="~amd64 ~x86" |
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IUSE="cpu_flags_x86_sse2 examples" |
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| 18 | ||
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IUSE="test cpu_flags_x86_sse2 examples" |
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# Test script missing from tarball |
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# ./scripts/sim/run.sh: No such file or directory |
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RESTRICT="test" |
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REQUIRED_USE="cpu_flags_x86_sse2 ${PYTHON_REQUIRED_USE}"
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| 20 | 24 | |
| 21 | 25 |
RDEPEND=" |
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${PYTHON_DEPS}
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| 23 | 27 |
dev-lang/perl |
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sys-libs/zlib" |
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sys-libs/zlib |
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" |
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DEPEND="${RDEPEND}"
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BDEPEND="app-arch/unzip" |
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BDEPEND=" |
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app-arch/unzip |
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test? ( |
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dev-perl/App-cpanminus |
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dev-perl/B-COW |
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dev-perl/Clone |
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dev-perl/Config-General |
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dev-perl/File-Which |
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dev-perl/local-lib |
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dev-perl/Math-Random |
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dev-perl/Test-Deep |
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dev-perl/Text-Template |
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) |
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" |
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| 27 | 45 | |
| 28 | 46 |
src_compile() {
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| 29 | 47 |
emake \ |